PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073199.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 359aa    MW: 39411.7 Da    PI: 9.1743
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.82.6e-33126180358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +vrY+eClkNhAas+Ggh vDGCgEfmps geegt++al+CaAC+CHRnFHR+e +
  XP_027073199.1 126 SVRYRECLKNHAASMGGHIVDGCGEFMPS-GEEGTPEALRCAACDCHRNFHRKEGD 180
                     79**************************9.999********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MEPRGQEKDI GSLPYSVGYS PPSFTNESST KPPSAPSLDR RRIDAGRGSI IPITPSPNQT  60
LDQQQNPPQQ QLYAHKDSNP DPDPVQVTNA TPISGASNSK TATVAAQQPP PAPAASGANT  120
TAPGSSVRYR ECLKNHAASM GGHIVDGCGE FMPSGEEGTP EALRCAACDC HRNFHRKEGD  180
GEPQAGTSGY YTQNHTPRLH NSAHQATLFR TQPQTSPIRM PPQHHHHQQQ HKFAHSYSHG  240
LTASPTGPMA PIMMTFGGNS GGAAAESSSE DLNMFQYNAG GQVVQQAFSV SRKRFRTKFT  300
QQQKDRMNEF AEKLGWKIQK QDEQEVQQFC SEVGVKRQVF KVWMHNNKQA MKKKQILHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-61ZF-HD family protein