PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072618.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 458aa MW: 50439 Da PI: 8.8588

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	187	243	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geH h+k XP_027072618.1 187 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHSHPK 243 9*************************************.*************85 PP
2	WRKY	102.8	2e-32	375	432	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver+++dp+++ +tYeg+Hnhe XP_027072618.1 375 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSDDPNAFMTTYEGKHNHE 432 7********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEIKETEKVA IAKPVASRPT CSGFKSFSEL LAGAINASPS STCSEAAVTA IRPRTVRFKP 60 AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMEQE 120 LAEVEANFQL PNLVKPQCDN RSEPHQNFLS AAQKNKRVEP SNVTTQNLEE DQRSLAHTAN 180 GDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSLDGQI AEIVYKGEHS 240 HPKTQPVRRN SSDGHWQGTS GNESNNPLCR NQHSDKNECY EGTMENPNEF GFLAHSSYSG 300 GAPSCMHPTN GDLDNSSCHS GEFDEGREGL EGETEGPKRK RRKNDNQSNV AGTAAEGAQE 360 PQVLGQNSTD SEIIRDGFRW RKYGQKVVKG NPYPRSYYRC TSLKCNVRKY VERTSDDPNA 420 FMTTYEGKHN HEMPTKSTSS LAAKTSTKAL GTKKIYLD

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEIKETEKVA IAKPVASRPT CSGFKSFSEL LAGAINASPS STCSEAAVTA IRPRTVRFKP  60
AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMEQE  120
LAEVEANFQL PNLVKPQCDN RSEPHQNFLS AAQKNKRVEP SNVTTQNLEE DQRSLAHTAN  180
GDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSLDGQI AEIVYKGEHS  240
HPKTQPVRRN SSDGHWQGTS GNESNNPLCR NQHSDKNECY EGTMENPNEF GFLAHSSYSG  300
GAPSCMHPTN GDLDNSSCHS GEFDEGREGL EGETEGPKRK RRKNDNQSNV AGTAAEGAQE  360
PQVLGQNSTD SEIIRDGFRW RKYGQKVVKG NPYPRSYYRC TSLKCNVRKY VERTSDDPNA  420
FMTTYEGKHN HEMPTKSTSS LAAKTSTKAL GTKKIYLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	344	PKRKRRKN
2	338	343	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	1e-108	WRKY family protein