PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072126.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 423aa MW: 46685.4 Da PI: 7.7534

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.5	1.5e-41	100	177	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl+ ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr++q+ XP_027072126.1 100 RCQVEGCNLDLTAAKDYHRRHRICESHSKSPKVIVAGVERRFCQQCSRFHNLSEFDDKKRSCRRRLSDHNARRRRPQP 177 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MHSQDSAMDG GKATELDRDY FGTVNSWPNE NRKEEDFIGV EKGESYSAPA ASLGFDQPVV 60 GLKLGMPKDS KHLSSITNSS LSSNSGKRSR ASHQGMQTSR CQVEGCNLDL TAAKDYHRRH 120 RICESHSKSP KVIVAGVERR FCQQCSRFHN LSEFDDKKRS CRRRLSDHNA RRRRPQPDAM 180 HLSSMGLPSS LYGRRAPSFL LSRMPSSSSN RTWECSSGLK MANAGNSLIR ASGNVDRKQY 240 FLMGVPNAIS HQDLDEDCPP YGIESKGPVY LVFYTFFSTS SPVIYMESIN ASEDVSPGHA 300 QSHLNESQNL PCALSLLSTP SWALHEPESA SLEQLMQGSV SIPQPASQLE SQNWHLISEA 360 RVSAEQAPSV TPFHSMACKI LIIPTCQDID PLSHLMTLAS ISPVELTDKL IVNSSKRGFS 420 SFS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MHSQDSAMDG GKATELDRDY FGTVNSWPNE NRKEEDFIGV EKGESYSAPA ASLGFDQPVV  60
GLKLGMPKDS KHLSSITNSS LSSNSGKRSR ASHQGMQTSR CQVEGCNLDL TAAKDYHRRH  120
RICESHSKSP KVIVAGVERR FCQQCSRFHN LSEFDDKKRS CRRRLSDHNA RRRRPQPDAM  180
HLSSMGLPSS LYGRRAPSFL LSRMPSSSSN RTWECSSGLK MANAGNSLIR ASGNVDRKQY  240
FLMGVPNAIS HQDLDEDCPP YGIESKGPVY LVFYTFFSTS SPVIYMESIN ASEDVSPGHA  300
QSHLNESQNL PCALSLLSTP SWALHEPESA SLEQLMQGSV SIPQPASQLE SQNWHLISEA  360
RVSAEQAPSV TPFHSMACKI LIIPTCQDID PLSHLMTLAS ISPVELTDKL IVNSSKRGFS  420
SFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	174	KKRSCRRRLSDHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	4e-45	SBP family protein