PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072108.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 320aa MW: 35818.9 Da PI: 9.1514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.3e-11	143	190	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RRd+i ++f L l+P + kKl+K+++ e +++++k+Lq XP_027072108.1 143 QEHLLAERKRRDKISQRFVCLSALVPGL-----KKLDKSSVIEGTIKHLKELQ 190 568899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MNKMKLTTGQ SVDTCYLSFA SPASFKYCSS SPSNSGPHRT SRTTILKPSI SRFCTTSDQE 60 TFKRPSSLAP TNTISFGNLK SPNSGDHQHN EELSFSTNTK VTMLPLNFST GCPSCFEETD 120 QYAAMRYQLP VKRAGTRTPS QAQEHLLAER KRRDKISQRF VCLSALVPGL KKLDKSSVIE 180 GTIKHLKELQ DCLKALEEGR NREHDQELVV YKKKPCIRFH QEASLSSFDQ SLTNLEVRIL 240 KGNVLVKACC RRRSGFTDDF LHEMEKLDLV IETSSFMPFA DNLLAISAAA KMNDGFSLTE 300 ENLANNISRA ILKLIHPKLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	ERKRRD
2	150	155	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-37	bHLH family protein