PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070587.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 304aa MW: 32797.7 Da PI: 7.8612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H XP_027070587.1 125 YQCKTCNRSFPSFQALGGHRASH 147 9***********99999998887 PP
2	zf-C2H2	13.7	0.00018	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_027070587.1 206 HECSICGAEFSSGQALGGHMRRH 228 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MEVHQEEIIL GSKHMIFKGK RTKRQRTVSQ PPFLLTMATT TSSSCSTGTP GGDSFTAFNR 60 VTASPSNSGE LTQTSVAGVD QEEDMANCLI LLAQGRARKS TQPTTHLPMP STSTAKSSSA 120 VHDVYQCKTC NRSFPSFQAL GGHRASHKKP KPTDLEDKSP PPLSLGGHQE STVGLIRDED 180 TTLSLQIPSG RKDPIISGDV NKSRVHECSI CGAEFSSGQA LGGHMRRHRP LPTLTGTSSN 240 DDEGSREFAA KKPRALLSLD LNLPAPPDQP EDDYSTESKY PFASAKQQVI VFSASPHPLV 300 DCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	5e-55	C2H2 family protein