PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G03510.1
Common NameF12E4_290
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 292aa    MW: 31528.6 Da    PI: 7.779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G03510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094192214123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+  Fs+   L  H+r+H
  AT5G03510.1 192 HECSICKAEFSSGQALGGHMRRH 214
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-12117142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-9117140No hitNo description
PROSITE profilePS5015710.45118145IPR007087Zinc finger, C2H2
SMARTSM003550.041118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-9187214No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4189216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-12191216IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432192219IPR007087Zinc finger, C2H2
SMARTSM003550.031192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0009005anatomyroot
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE  60
VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF FSNKKPVASL GLGLDGVYQC  120
KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT  180
SSDGSKKPEK THECSICKAE FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE  240
ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.332670.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453575970.0
Genevisible250949_at0.0
Expression AtlasAT5G03510-
AtGenExpressAT5G03510-
ATTED-IIAT5G03510-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G03510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G03510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195971.10.0C2H2-type zinc finger family protein
TrEMBLA0A178U6H40.0A0A178U6H4_ARATH; Uncharacterized protein
TrEMBLQ9LZD50.0Q9LZD5_ARATH; C2H2-type zinc finger family protein
STRINGAT5G03510.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Representative plantOGRP23501035
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Mittler R, et al.
    Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress.
    FEBS Lett., 2006. 580(28-29): p. 6537-42
    [PMID:17112521]