PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069816.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 341aa MW: 37630.9 Da PI: 9.1098

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133	1e-41	93	170	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl+ ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr++q+ XP_027069816.1 93 RCQVEGCNLDLTAAKDYHRRHRICESHSKSPKVIVAGVERRFCQQCSRFHNLSEFDDKKRSCRRRLSDHNARRRRPQP 170 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDGGKAAELD RDYFGTVNSW PNENRKEEDF IGVEKGESYS APAASVGFDQ PVVGLKLGMP 60 KDSKHLSSIT NSSLSSNSGK RSRASHQGMQ TSRCQVEGCN LDLTAAKDYH RRHRICESHS 120 KSPKVIVAGV ERRFCQQCSR FHNLSEFDDK KRSCRRRLSD HNARRRRPQP DAMHLSSMGL 180 PSSLYGRRAP SFLLSRMPSS SSNRTWECSS GLKMANAGNS LIRASGVDVS PGHAQSHLNE 240 SQNLPCALSL LSTPSWALHE PESASLEQLM QGSVSIPQPA SQLESQNWQL ISEARVSAEQ 300 APSVTPFHSM ALQSTDNSHL PGYRSFKPPY DSGFHFTSRI N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KKRSCRRRLSDHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-45	SBP family protein