PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069385.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 554aa MW: 61786.8 Da PI: 6.0506

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.4	1.3e-34	164	255	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d++l+++isw ++g+sfvv+d+ efa+++Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++ weF+ +sF +gk++ll++ XP_027069385.1 164 FLSKTFDLVDDPALDSIISWGASGQSFVVWDPVEFARRILPRNFKHNNFSSFVRQLNTYGFRKIDADK---------WEFASESFLRGKRHLLKN 249 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks XP_027069385.1 250 IQRRKS 255 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MTHKKSVPER KHGRSSRSIR LAFIMVGYSL ATHCLPCYVI RLTSSCLLAE VRTAILPPCL 60 GTGDGTAEGT LHRLKCIMNP HDRDENSVFP SSNSPSSSPP ENQSSEVVPL SMVSPFVDLE 120 SRQHLQEIVP GILSGGTITT EAARSFPGMP QPMECLQGTP VPPFLSKTFD LVDDPALDSI 180 ISWGASGQSF VVWDPVEFAR RILPRNFKHN NFSSFVRQLN TYGFRKIDAD KWEFASESFL 240 RGKRHLLKNI QRRKSPHSHQ LGGSSGSTGE AGKIVLEGEV EKLRKERSLM MQEVFELQEQ 300 QLGTIQHVEA VNEKLQAAER RQKLMVSFMA KLFQNPDILD RLKQIKEQKQ ITSSRTMRKF 360 LKHQPHEPGK AESFLERQIV KYRTNFRDLA TPSAAPEFDP GAVEQLPEFT LQEPSGGGFS 420 SQGTEDTLLK WKTVVPPEVI PEYFVTSPDD SAKEKNFPEY SSLDIESMLK EQGPWSMDFE 480 AGAGVSSSSN EIWGNAVNYE IPELMVSSGL SDIWNLGSLP AAGSSGAEKW PDDEFPFSKL 540 DDQVGQHKDE SSNF

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MTHKKSVPER KHGRSSRSIR LAFIMVGYSL ATHCLPCYVI RLTSSCLLAE VRTAILPPCL  60
GTGDGTAEGT LHRLKCIMNP HDRDENSVFP SSNSPSSSPP ENQSSEVVPL SMVSPFVDLE  120
SRQHLQEIVP GILSGGTITT EAARSFPGMP QPMECLQGTP VPPFLSKTFD LVDDPALDSI  180
ISWGASGQSF VVWDPVEFAR RILPRNFKHN NFSSFVRQLN TYGFRKIDAD KWEFASESFL  240
RGKRHLLKNI QRRKSPHSHQ LGGSSGSTGE AGKIVLEGEV EKLRKERSLM MQEVFELQEQ  300
QLGTIQHVEA VNEKLQAAER RQKLMVSFMA KLFQNPDILD RLKQIKEQKQ ITSSRTMRKF  360
LKHQPHEPGK AESFLERQIV KYRTNFRDLA TPSAAPEFDP GAVEQLPEFT LQEPSGGGFS  420
SQGTEDTLLK WKTVVPPEVI PEYFVTSPDD SAKEKNFPEY SSLDIESMLK EQGPWSMDFE  480
AGAGVSSSSN EIWGNAVNYE IPELMVSSGL SDIWNLGSLP AAGSSGAEKW PDDEFPFSKL  540
DDQVGQHKDE SSNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	5e-97	HSF family protein