PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027068450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-PHD | ||||||||
Protein Properties | Length: 702aa MW: 79059.2 Da PI: 10.0624 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.4 | 3.9e-11 | 484 | 531 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +f ++ +e L +F++n ps++ r L+++lgL+ ++V WF+N R+ XP_027068450.1 484 RFPRHVVEKLRVVFAENELPSRTIRDNLSRQLGLESEKVNKWFKNARY 531 6778999***************************************97 PP | |||||||
2 | HLH | 14.7 | 5.5e-05 | 649 | 681 | 7 | 42 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKae 42 e+E R ++++++e+L+++l + ps + sKa+ XP_027068450.1 649 EAEMERLCKMKDKIEKLQQVLLRL---PSSRSSKAD 681 7899*******************9...999999996 PP | |||||||
3 | PHD | 38.1 | 3.6e-13 | 224 | 278 | 1 | 50 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ Ck+ XP_027068450.1 224 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCRYCKS 278 588888854455********56********************9999*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence |
MAGETKKRKR KGVSDSSQKE KSPKKQCSKG VKLKPKLQVK SGNSESKHMK KCFDRLGEGK 60 GNISRRKSIV KKAIMQKTKS LKKQSELKTS RKDEPEVKNS KDGGKRDSSD VGLQKAKRRK 120 RRKRRKENLE LDEASRLQRR TRYLLIKVKL EQNLIDAYSA EGWKGHSREK IKPEKELERA 180 KKQILKCKLG IREAICQLDV LSSVGHIEDS AVAPDGSVHH EHIICAKCKL REAFPDNDIV 240 LCDGTCNCAF HQKCLDPPLS TENIPPGDEG WFCRYCKSKM EILEVTNAHL GTNFPLESNW 300 QDIFKEEAAL LDGKESLLCP EEEWPSDDSE DVDYDPEGRE FHSPNSMSGS GSDSSVDVSS 360 SNSLSSIEDD ILLLSERLDK RHMVSEGNIA GVESDEATDC EVLSGPRQRK AVDYIKLHDE 420 MFGKNAVVSE QISEDEDWGP SRRKHRGKES NVESTVVTTG GNPGTSAEVK KKLSSGRSKR 480 PIFRFPRHVV EKLRVVFAEN ELPSRTIRDN LSRQLGLESE KVNKWFKNAR YLALKARKKA 540 KRLNASGPTV SKESASRSGE DKSADLVTSE NVAIEHELES PGLKSSSRRK TAHLMASAFT 600 RKRHKTALPP TNNKTPADFG DDVCLKLLRE KVKKKKKMNI KRTVMPEAEA EMERLCKMKD 660 KIEKLQQVLL RLPSSRSSKA DAAALNELAI IYVPVAELRE KR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 11 | KKRKRK |
2 | 6 | 29 | KKRKRKGVSDSSQKEKSPKKQCSK |
3 | 6 | 36 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
4 | 7 | 30 | KKRKRKGVSDSSQKEKSPKKQCSK |
5 | 7 | 37 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
6 | 8 | 38 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
7 | 117 | 123 | KRRKRRK |
8 | 117 | 125 | KRRKRRKRR |
9 | 118 | 124 | KRRKRRK |
10 | 118 | 126 | KRRKRRKRR |
11 | 118 | 127 | RRKRRKRRKE |
12 | 119 | 149 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
13 | 119 | 125 | KRRKRRK |
14 | 119 | 128 | RRKRRKRRKE |
15 | 120 | 150 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
16 | 120 | 126 | KRRKRRK |
17 | 121 | 151 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
18 | 121 | 127 | RRKRRKE |
19 | 122 | 152 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
20 | 122 | 128 | RRKRRKE |
21 | 123 | 153 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
22 | 633 | 663 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
23 | 634 | 664 | KKRKRKGVSDSSQKEKSPKKQCSKGVKLKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-96 | HB-PHD family protein |