PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067899.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 457aa MW: 47475 Da PI: 6.93

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	241	286	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_027067899.1 241 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 286 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW 60 PAPDLIKTQP PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN 120 GLRSPPGPNG GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTVQPST 180 QLQHFHHPQG GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP 240 HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA 300 VAPLAADMSS EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY 360 LQGKGLCLMP ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS 420 SPSMSVLTVQ SATMVSGGGG PGGEPSSVKD AASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW  60
PAPDLIKTQP PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN  120
GLRSPPGPNG GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTVQPST  180
QLQHFHHPQG GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP  240
HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA  300
VAPLAADMSS EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY  360
LQGKGLCLMP ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS  420
SPSMSVLTVQ SATMVSGGGG PGGEPSSVKD AASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	251	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-65	bHLH family protein