PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067773.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 216aa MW: 24635.5 Da PI: 9.299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	41	88	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RRd+i ++f L l+P + kKl+K+++ e +++++k+Lq XP_027067773.1 41 QEHLLAERKRRDKISQRFVCLSALVPGL-----KKLDKSSVIEDTIKHLKELQ 88 568899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MLPLNFSTGC PSCLEETDQY AAMRYQLPVK RAGTRTPSQA QEHLLAERKR RDKISQRFVC 60 LSALVPGLKK LDKSSVIEDT IKHLKELQER LKAFEEGRNR KHDQELVVYK KKQCIHFHQE 120 ASLSSFDQSL TNLEVRILKG NVLVKACCRR RSGFTDAFLH EMEKLDLVIE TSSFMPFADN 180 LLAISAAAKM NDGFSMTEEN LANNIRLAIV KLIHSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERKRRD
2	48	53	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	9e-43	bHLH family protein