PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067307.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 147aa    MW: 16711.4 Da    PI: 8.7004
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.61.7e-3251031101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++r++C++dC+lapyf +++  +f  vh+lFG +nv+k+l+++ ++er+++++++++eA++r ++Pv+G+++v  +l+ +++  ++el+
  XP_027067307.1   5 ACAACKHQRKRCPPDCPLAPYFRKKD--DFVRVHRLFGLNNVVKMLERAGDHERPKMAETIIMEAKIRRDNPVHGSLAVKAQLKAEIDACRKELD 97 
                     7********************98766..9****************************************************************** PP

          DUF260  96 llkeel 101
                      ++++l
  XP_027067307.1  98 FVQKQL 103
                     *99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MFTGACAACK HQRKRCPPDC PLAPYFRKKD DFVRVHRLFG LNNVVKMLER AGDHERPKMA  60
ETIIMEAKIR RDNPVHGSLA VKAQLKAEID ACRKELDFVQ KQLTFLKKAT EINKEKEQLE  120
AELDKRPLVI QCEENAGEEG SSSKSCA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-28LBD family protein