PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067050.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 284aa MW: 32966 Da PI: 8.4661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.8	9e-26	34	116	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k lWe ++ kmre+g++rs++qCk+kw+nl +ryk ++++e ++ +++++p++++l+ XP_027067050.1 34 QWSMQETRDFLMIRAELDPTFMETKRNKLLWEVIATKMREKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---VRQQFPFYNDLQ 116 7******************************************************************96...77889**997 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MESHQHQHHH HQYGSSSSVH IDTGGGGGGD RFPQWSMQET RDFLMIRAEL DPTFMETKRN 60 KLLWEVIATK MREKGYNRSA EQCKCKWKNL VTRYKGCETM EPEGVRQQFP FYNDLQTIFA 120 ARMQRMLWME AEGGAGSSKK KAAQLSSDDE DDNDDSEVER AHKKKRKLKA GGGGGGGGAS 180 SASASAAAGG NVVNSLKEIL DEFMKQQMQI EMQWMKAYEA REEERRKRET EWRQTMEALE 240 NERLMMDKRW REREEQRRIR EEARAEKRDA LITALLNKLQ REDR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	168	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-60	Trihelix family protein