PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066443.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 342aa MW: 39454.8 Da PI: 8.1971

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.4	2.2e-17	16	104	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk++ ++++ rl +p f++ + g+ + + l+d+ g+ W v+l + +++++ +GW +Fvk+n ++ gDf+vF++dg+ f +vk XP_027066443.1 16 FFKAF--IPNTSTERLKIPIAFTKMIRGS--LPDKAFLRDRYGNIWPVEL--ARIENATFFLEGWAKFVKDNSVELGDFLVFHFDGNCVF--NVK 102 88999..55667778******999777..6779***********..88888877777********************99999..776 PP EE CS B3 96 vf 97 ++ XP_027066443.1 103 LL 104 65 PP
2	B3	38.5	2e-12	250	333	10	96
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + +++ l++p + +++h+++ + +++l d++gr+W+ +l+ + gr++ +GW++ ++ n + e D+++ ++++r+++ l++ v XP_027066443.1 250 TKRQDELYVPVDVVKDHNLE--FPPEIVLHDPKGREWRARLRRWSD-GRIWYCGGWRSLCRLNLVGEEDICICEFVKREGGGLRINV 333 567799*********877..6779***********65555.4566677******************9998877676654 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MVKGKRKDDS NRIPAFFKAF IPNTSTERLK IPIAFTKMIR GSLPDKAFLR DRYGNIWPVE 60 LARIENATFF LEGWAKFVKD NSVELGDFLV FHFDGNCVFN VKLLGHTACD KKGVGGRMFK 120 VKEEEENEKE EDEKGENESL QNNYNTVDET DHNEEYNAEE EEEEEEEMQV QQKAKSNQRA 180 AKPKASCKGL KKIKKSINGP ADLVSHKSGT EASKCNLWKA KRIDAYGFNL FKSGKIPQPK 240 NPYFVTKVRT KRQDELYVPV DVVKDHNLEF PPEIVLHDPK GREWRARLRR WSDGRIWYCG 300 GWRSLCRLNL VGEEDICICE FVKREGGGLR INVTFVRPED LA

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MVKGKRKDDS NRIPAFFKAF IPNTSTERLK IPIAFTKMIR GSLPDKAFLR DRYGNIWPVE  60
LARIENATFF LEGWAKFVKD NSVELGDFLV FHFDGNCVFN VKLLGHTACD KKGVGGRMFK  120
VKEEEENEKE EDEKGENESL QNNYNTVDET DHNEEYNAEE EEEEEEEMQV QQKAKSNQRA  180
AKPKASCKGL KKIKKSINGP ADLVSHKSGT EASKCNLWKA KRIDAYGFNL FKSGKIPQPK  240
NPYFVTKVRT KRQDELYVPV DVVKDHNLEF PPEIVLHDPK GREWRARLRR WSDGRIWYCG  300
GWRSLCRLNL VGEEDICICE FVKREGGGLR INVTFVRPED LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06160.1	1e-20	B3 family protein