PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027065885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 610aa MW: 70220.5 Da PI: 5.2917 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 581 | 599 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C++Cg+ F ++ L+rH+ XP_027065885.1 581 RCEKCGEEFESRNKLHRHL 599 6*****************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence |
MASSEEPKRC LYEVLGLSRA CSVDEIRSAY KKLALQRHPD KLVKSGLSEA EATAQFQELV 60 NAYEVLSDPR ERAWYDSHRS QILFSSSSPA TGNSSNSVYV PNLFSYFSNS VYSGYSDSGK 120 GFYKVYGDVF DKIYQNELNF AKRLGLGFPK EAPVMGNLDS YYTQVTAFYN YWLGFVTLMD 180 FCWVDQYDVM AGPNRKSRRV MEEENKKLRK KARREYNDTV RGLAEFVKKR DKRVIDMQMK 240 RAEEVERRKE EERERKKELE RQKAERAKKY EEPEWAKVED IEDEDTEEIV DDDKKKKGDG 300 KELYCVACGK KFKSDKQWKN HEQSKKHKEK VAELRNTFIE EDEEYEEGKT EEVGEEYDEE 360 DEVGAEESGF LSADDEVDEL MDHFNSTMEI REEGNDEAQS SEQDGLVDRD SGICLKELQS 420 DMRSDDDEAS NLEAMVSGQK NRKNGSLDQK PKRASNKIPV KVDSNEMDFM AYNNMKGSRR 480 NRGGRKQRGR TLEEAAQTEI AEAHVEAENN GYHDTMKEAS SDSFLETQSR GKEDDESETS 540 HKLSRQAVNK KGTAKSDSNF KSKEAPKGRK KKANTKVISN RCEKCGEEFE SRNKLHRHLG 600 DTGHATLKSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 232 | RKSRRVMEEENKKLRKKARREYNDTVRGLAEFVKKRDK |
2 | 206 | 214 | KKLRKKARR |
3 | 294 | 331 | RKSRRVMEEENKKLRKKARREYNDTVRGLAEFVKKRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-158 | C2H2 family protein |