PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065746.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 164aa    MW: 17569.5 Da    PI: 5.9771
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.59.8e-5929126198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y++plkvyl++yre+eg
  XP_027065746.1  29 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKVYLTRYREMEG 123
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_027065746.1 124 DTK 126
                     975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MADSSQGGTP ASPGGGSHES GDQSPRSGVR EQDRFLPIAN ISRIMKKALP ANGKIAKDAK  60
ETVQECVSEF ISFITSEASD KCQREKRKTI NGDDLLWAMA TLGFEEYIDP LKVYLTRYRE  120
MEGDTKGSAK GADGSAKRDG VQLGPSPQGS FSQGMNYGSS QING
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.15e-82NF-YB family protein