PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063507.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 224aa    MW: 25477 Da    PI: 6.529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-101562554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                      ++E++RR+++++ +++L  l+P++   +sk  l+  +   +A++YIks+
  XP_027063507.1 15 RRIVEKNRRSHMKDLYARLYGLVPSD---SSKEnLTVPDQIDEAINYIKSM 62
                    5799*********************7...55555***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MERFHPSTSN PKMERRIVEK NRRSHMKDLY ARLYGLVPSD SSKENLTVPD QIDEAINYIK  60
SMEKKLEKCK EKKEKLLFGK RPYAGATGET TKITNVEVHD MGPNLDVILL NGLEEQASFY  120
GIIRLLCKEG FEVVNANFSS NGNSVLQVVH DKGGISTSRT ETTAVAKRLK ELIYGYSRGE  180
VESRLDSWVE SRLGPWDFEI EPDILNSNVL ELMSPGQFCF LQQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-20bHLH family protein