PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063348.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 216aa    MW: 24767.1 Da    PI: 6.8063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-071562554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                    + + E+ RR+r ++ +++L +llP++   +sk  l   +   +A++YIks+
  XP_027063348.1 15 KRIKEKDRRHRFKNLYSQLYSLLPSD---SSKEvLPVPDKIGEAINYIKSM 62
                    6789*********************9...77778***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MEKFHPSTSN SKPEKRIKEK DRRHRFKNLY SQLYSLLPSD SSKEVLPVPD KIGEAINYIK  60
SMERKLENYK QMKEKLLCGR RRYSSIKSSE LMNVEVHDMG PDTDMILISG LKEPASFYGK  120
IRLLHEEGFE VVNANFSNNG NSMLQVVHEK GGISTSSTET TEIAKRKRLK ELIYGYSHGE  180
EESTLDLWDF EVEPDLLDSG FLGPLPAGQF SFLQQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-17bHLH family protein