PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027063091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 285aa MW: 30947.4 Da PI: 8.9541 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.3 | 1.1e-32 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+snv k+l++ +eeer++a++sl++eA a++rdP++G g ++++ ++l+ k++ XP_027063091.1 9 ACASCKHQRKKCTDKCILAPFFPVEKNREFQAVHKIFGVSNVAKILRSHnSEEERKRAADSLIWEAFAWQRDPIQGPSGEFRRVVEELKFYKTQY 103 7*********************************************99846666**************************************999 PP DUF260 95 allkee 100 +++ ++ XP_027063091.1 104 QKIASQ 109 988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MQRSNGLPAC ASCKHQRKKC TDKCILAPFF PVEKNREFQA VHKIFGVSNV AKILRSHNSE 60 EERKRAADSL IWEAFAWQRD PIQGPSGEFR RVVEELKFYK TQYQKIASQL PPTSQVTTSM 120 GYKPAVIAAV ASPVLVNGAW NNACNNNANI NGGISTMMNN IRGGLSSNGG GLGGAHDHPN 180 GNSIIDHSPN PFAYGANSNH LVVQTMEHQN GSAAVILSQQ HPNGNSNGVL QGFEHQNGTA 240 AVMLPQQHHT ISGFNQQYYI PTGQYNSSTD VNGKTAESSP WHGNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 5e-39 | LBD family protein |