PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027063041.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 258aa    MW: 29659.6 Da    PI: 4.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027063041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l  +v+++G  +W+  ++  g  R++k+c++rw +yl
   XP_027063041.1 14 KGAWSGEEDNKLRAYVQRYGHWNWRQLPKFAGVARCGKSCRLRWMNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding49.31.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ + + +lG++ W++Ia++++ gRt+++++++w++
   XP_027063041.1  67 RGKYTKEEEDLIREWHDKLGNK-WSAIAAKLP-GRTDNEIINYWHT 110
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRTSFTDEN GTKKGAWSGE EDNKLRAYVQ RYGHWNWRQL PKFAGVARCG KSCRLRWMNY  60
LRPGLKRGKY TKEEEDLIRE WHDKLGNKWS AIAAKLPGRT DNEIINYWHT QLKKRMKKIP  120
PTKNPAGTPT EDSCKSEANQ EGQPDISHQE ELPQENVGPE ASVLQSSERI ETSITQSSSE  180
MSSSNSNWVP EDGISSWDQS FAEVESFWSE PFVLDTSYNQ NNCDLSPLFG DQEGVFASYS  240
SYLDDNNDFL YQWIEDHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-52MYB family protein