PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061165.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 266aa MW: 30194.4 Da PI: 8.4616

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl XP_027061165.1 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	60.5	3.5e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEdel++++++ lG++ W++Ia +++ gRt++++k++w++ XP_027061165.1 67 RGNYTKEEDELIIKLHESLGNR-WSAIATHLP-GRTDNEIKNHWHTT 111 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MVRTPCCDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPNLKRGNY TKEEDELIIK LHESLGNRWS AIATHLPGRT DNEIKNHWHT TLNKSTKQES 120 RSGEPKRSSK SRSNREKNIR KRRKEEQENP PANPATQEIL ESSQISSQLS PSPSSSLSSP 180 SSDHQLSSSN STTTTSDIHA PDSSNSLAGF SDIIAELAAE SGGTFWTEPF VTDYCNIAYY 240 PPSPFTSEAL LCSYDYYDDN VNTLLW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	145	RKRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	6e-56	MYB family protein