PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061150.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 634aa MW: 70577.1 Da PI: 6.1666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	170	189	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F++ +L H+r XP_027061150.1 170 TCSICGKNFPSMKSLFGHMR 189 6******************8 PP
2	zf-C2H2	11.9	0.0007	472	494	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F+++ L H ++H XP_027061150.1 472 YRCTTCDKCFPTHQALGGHRSSH 494 9***************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MSTVDDKEDQ ISESIKKEHP DHKSSVLGDH GELWIKLKIN PSSDEDGDEE EEEDFEKDQP 60 ERPPQSKTKS NSNTRICQVC SKVFGSGKAL GGHMRIHFQT NKDVIFRKKL IKCSQQEPLI 120 KLKKKRKRQA YAAAAAADFA KNKDLWKIKS SSSDHDSAVA GFNKNNTNPT CSICGKNFPS 180 MKSLFGHMRC HPDREWRGIQ PPSWAAVKPS PSSSVSDAEP QKTDVDDDDY QHHQVDSADG 240 DGDQTVDLTK TLGGWSVTAK RGRKAIVENI EEDEGMRDAV YHLMSLAQGG DSSSDVKLQV 300 KNRHKFEEFE ATNSNSLAYK SENDEDLMTK SAPGSKKKRK KESSADHPVK ELRNEGRKLD 360 GIHLDYMINM GENSAEAVKE TDLFAGKLAN LDCQWEEENT WPKEPKDYYA DKDCSDSENT 420 LDDRLLIDRK NDERSNGNVI AVKSRKKRKR MKLRDLDQFN PVLTLTTSLE KYRCTTCDKC 480 FPTHQALGGH RSSHNKFRMV IQNSYGESTF AAATDEYGTL GNYTPNPGVD ESKESDEGAA 540 SSHECRIGNK KFLTGQALGG HKRCHWPAAG QMEGPSSQVT SAGEVSGTDR RVMEFDLNEV 600 PPLEEDAGVE CDHAAGYGCA SSSFNSVEFQ GLCA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MSTVDDKEDQ ISESIKKEHP DHKSSVLGDH GELWIKLKIN PSSDEDGDEE EEEDFEKDQP  60
ERPPQSKTKS NSNTRICQVC SKVFGSGKAL GGHMRIHFQT NKDVIFRKKL IKCSQQEPLI  120
KLKKKRKRQA YAAAAAADFA KNKDLWKIKS SSSDHDSAVA GFNKNNTNPT CSICGKNFPS  180
MKSLFGHMRC HPDREWRGIQ PPSWAAVKPS PSSSVSDAEP QKTDVDDDDY QHHQVDSADG  240
DGDQTVDLTK TLGGWSVTAK RGRKAIVENI EEDEGMRDAV YHLMSLAQGG DSSSDVKLQV  300
KNRHKFEEFE ATNSNSLAYK SENDEDLMTK SAPGSKKKRK KESSADHPVK ELRNEGRKLD  360
GIHLDYMINM GENSAEAVKE TDLFAGKLAN LDCQWEEENT WPKEPKDYYA DKDCSDSENT  420
LDDRLLIDRK NDERSNGNVI AVKSRKKRKR MKLRDLDQFN PVLTLTTSLE KYRCTTCDKC  480
FPTHQALGGH RSSHNKFRMV IQNSYGESTF AAATDEYGTL GNYTPNPGVD ESKESDEGAA  540
SSHECRIGNK KFLTGQALGG HKRCHWPAAG QMEGPSSQVT SAGEVSGTDR RVMEFDLNEV  600
PPLEEDAGVE CDHAAGYGCA SSSFNSVEFQ GLCA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	128	RKKLIKCSQQEPLIKLKKKRKR
2	123	149	KKKRKRQAYAAAAAADFAKNKDLWKIK
3	337	341	KKRKK
4	445	450	RKKRKR
5	446	453	KKRKRMKL
6	448	454	RKRMKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-22	C2H2 family protein