PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027061109.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 221aa    MW: 24976.3 Da    PI: 9.3155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027061109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-101562554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                      ++E++RR+++++ +++L  l+P++   +sk  l+  +   +A++YIks+
  XP_027061109.1 15 RRIVEKNRRSHMKDLYARLYGLVPSD---SSKEnLTVPDQIDEAINYIKSM 62
                    5799*********************7...55555***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MERFHPSPSN PKMERRIVEK NRRSHMKDLY ARLYGLVPSD SSKENLTVPD QIDEAINYIK  60
SMEKKLEKCK EKKEKLLFGK RPYSGATSET TKITNVEVHD MGPNMDVILL NGLEEQASFY  120
GIIRLLCKEG FEVVNANFSS NGNSVLHVVH DKGGISTSRT ETTAVVKRLK ELIYGYSHGE  180
VESRLDSWVE SRLDLCFQTR TGPAGRTGRT GNRPGSRSES H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-20bHLH family protein