PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027060958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26527 Da PI: 6.6746 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.3 | 2.1e-06 | 25 | 64 | 2 | 40 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STC CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.kapskKlsK 40 +++ ++ E++RRd++++ ++L +llP++ k+ ++ ++K XP_027060958.1 25 KTKRKITEKNRRDQMKNLCNKLYRLLPSDIsKGLCPQPDK 64 567899**********************744333333333 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MLSLYQPNFG FKNMETFHAS ASNTKTKRKI TEKNRRDQMK NLCNKLYRLL PSDISKGLCP 60 QPDKIEDATY HIKSMEKKLE DYQEIKKKLL HGKRPCSSAS SESNNSSTLT DVEVQDIGPD 120 ANMILISGLE EQASFYGIIR RLHAEGFEVV TANFSNTGTS TLQVVHEKVS SQVGASTSGS 180 ETTAVSKRLK ELIYGYPQGE VESKLDLLDF EIVPDLLTSD FFGPFATEKF CFLQQY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 32 | 38 | EKNRRDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-12 | bHLH family protein |