PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027060957.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 216aa    MW: 24622 Da    PI: 7.2573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027060957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-061562554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                    + + E++RR++ ++ +++L +llP++    sk  l   +   ++++YIks+
  XP_027060957.1 15 KRIKEKNRRNHFKNLYSQLYSLLPSD---ISKEvLPVPDKIGEVINYIKSM 62
                    6789*********************9...7777799999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MERFHPSTSN SKPEKRIKEK NRRNHFKNLY SQLYSLLPSD ISKEVLPVPD KIGEVINYIK  60
SMERKLENYK QMKQKLLGRK RRYSSTKSSE LTNVKVHDMG PDTDMILISG LKEPASFYGI  120
IHLLQEEGFE VVNANFSNDG NSMLQVVHEK GGISTSSTGT IEIAKRERLK ELIYGYSHGE  180
VESTVDLWDF EVEPDLLASG FLGPLPAGEF SFLQQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-16bHLH family protein