PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0355s0007.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 610aa MW: 65977.1 Da PI: 5.1617

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0355s0007.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.7	1.5e-18	351	383	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC+t+kTp+WR+gp g++tLCnaCGl++rk Bobra.0355s0007.1.p 351 CYNCKTKKTPQWRNGPHGERTLCNACGLKFRKG 383 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA 60 LDMANNDLIP DSLLVYGEQQ EIGGAQAWRI STQQDAQPSY PPMLEQVSAQ NGCLDGWRPV 120 RECIAPVPLS PVSDAKCLLS IRDETVYPAS PGYHQGTGQD HQSIFTSENN FTATINVAFN 180 SHTPQYLGHG QFPQMSPEYQ GFLSEEHGCG QPDLYLAEPQ YPELPRLELV VETRQLEMYH 240 SRQDPFQAQS IQDEFLDDMI AGDIDKFLKE CTRPADDVHV FHVEAGNPMH AEPASRAGSA 300 HQADGGQQRG RRPRFQNLSS TNPKSQPKNR AKGNNSSKSG GAFKRTQRSF CYNCKTKKTP 360 QWRNGPHGER TLCNACGLKF RKGALERCEY YEVHILNSDP TKPAPPPASG GGGPSGGRQK 420 GDDTTKQPTA NCPSLLSFGS LDTQQAQCFA SGANDLRACS IDHPEQVPRN VNLLCEDEVA 480 SKECEDPATS NSPASLEEQH RMEFSVDRIL QTACPTNNAS CPTAAGEHVE IPGMQITADY 540 CQIEEAMGAA SAVDHRMGKA SVPVFRQDLG AALPTASVKA FPCGATASAG IYQSGPGQEF 600 QQDLSTVYV*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA  60
LDMANNDLIP DSLLVYGEQQ EIGGAQAWRI STQQDAQPSY PPMLEQVSAQ NGCLDGWRPV  120
RECIAPVPLS PVSDAKCLLS IRDETVYPAS PGYHQGTGQD HQSIFTSENN FTATINVAFN  180
SHTPQYLGHG QFPQMSPEYQ GFLSEEHGCG QPDLYLAEPQ YPELPRLELV VETRQLEMYH  240
SRQDPFQAQS IQDEFLDDMI AGDIDKFLKE CTRPADDVHV FHVEAGNPMH AEPASRAGSA  300
HQADGGQQRG RRPRFQNLSS TNPKSQPKNR AKGNNSSKSG GAFKRTQRSF CYNCKTKKTP  360
QWRNGPHGER TLCNACGLKF RKGALERCEY YEVHILNSDP TKPAPPPASG GGGPSGGRQK  420
GDDTTKQPTA NCPSLLSFGS LDTQQAQCFA SGANDLRACS IDHPEQVPRN VNLLCEDEVA  480
SKECEDPATS NSPASLEEQH RMEFSVDRIL QTACPTNNAS CPTAAGEHVE IPGMQITADY  540
CQIEEAMGAA SAVDHRMGKA SVPVFRQDLG AALPTASVKA FPCGATASAG IYQSGPGQEF  600
QQDLSTVYV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	358	KRTQRSFCYNCKTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	3e-12	GATA family protein