PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0322s0015.3.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB_related

Protein Properties

Length: 551aa MW: 57417.3 Da PI: 9.9268

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0322s0015.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.2e-12	427	472	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 WT+eE ll+++++++G g+W++I r +Rt+ ++k+rw+ ++ Bobra.0322s0015.3.p 427 WTEEETRLLLEGIERHGLGSWEAIYRGARfANRTAVDLKDRWRVLR 472 ******************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MGPYPNTGAA APPAPPGGRP AEPGRVWEAS CSHAPADEIE DKGLLRVAPF ANAKQDALLP 60 RGFYFTRDPT VRQLKQAVLQ SKEVRKLPCA RTLDCLLWAR VPGKARGQSL LEFKQGAEQR 120 LSNYGIVVRG DPHDIWVTWG SLSSTAQERV AVDAVERSVA PRERASAVNP AADRAQRAAL 180 DLLNAPSPNP PVRITSPRAG IGSLSGSAAP ATRPRPPVLL PQARAGPPGS PPGPLPAPQR 240 RPLVSLPQGP AVPPGSGPSE RDAPLDLPGS GQSELPPADA LQPHPESRHR PGLSPQHAGP 300 SRRFPGPPAV TPGSAEVMVL FPATVPAAGP RGGPAAQTPE PASGSRTTAG AAGQRQSGET 360 AGGEGQAEEG AGSPRGAAAA GTPPGQEVGA RPAAEQLRER DPFAMSPTPP PRPQEGGRGR 420 RRPRAIWTEE ETRLLLEGIE RHGLGSWEAI YRGARFANRT AVDLKDRWRV LRNQMRPGVK 480 PRRDPLPPDL FARVCRLCHY THDGRLGDLG EAAGGSGPGG RGTGGGGEEG GQGGVERGDE 540 AGEEDDISSV *

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MGPYPNTGAA APPAPPGGRP AEPGRVWEAS CSHAPADEIE DKGLLRVAPF ANAKQDALLP  60
RGFYFTRDPT VRQLKQAVLQ SKEVRKLPCA RTLDCLLWAR VPGKARGQSL LEFKQGAEQR  120
LSNYGIVVRG DPHDIWVTWG SLSSTAQERV AVDAVERSVA PRERASAVNP AADRAQRAAL  180
DLLNAPSPNP PVRITSPRAG IGSLSGSAAP ATRPRPPVLL PQARAGPPGS PPGPLPAPQR  240
RPLVSLPQGP AVPPGSGPSE RDAPLDLPGS GQSELPPADA LQPHPESRHR PGLSPQHAGP  300
SRRFPGPPAV TPGSAEVMVL FPATVPAAGP RGGPAAQTPE PASGSRTTAG AAGQRQSGET  360
AGGEGQAEEG AGSPRGAAAA GTPPGQEVGA RPAAEQLRER DPFAMSPTPP PRPQEGGRGR  420
RRPRAIWTEE ETRLLLEGIE RHGLGSWEAI YRGARFANRT AVDLKDRWRV LRNQMRPGVK  480
PRRDPLPPDL FARVCRLCHY THDGRLGDLG EAAGGSGPGG RGTGGGGEEG GQGGVERGDE  540
AGEEDDISSV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	519	527	GGRGTGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	2e-08	MYB_related family protein