PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0201s0006.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

AP2

Protein Properties

Length: 658aa MW: 71914.6 Da PI: 8.6753

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0201s0006.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.9	1e-12	359	410	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++grW+A++++ + ++++lg + +e Aa+a++ a +k +g Bobra.0201s0006.1.p 359 SKYRGVTKHRRSGRWEAHVWV----KeLGRQVYLGGYEQEEHAAEAYDVAILKCKG 410 89**************999....3234*******************998766 PP
2	AP2	44.9	2.8e-14	453	502	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++ +grW+A+I p g +k+++lg f ++eeAa+ ++aa +l+g Bobra.0201s0006.1.p 453 SSFRGVTRHP-SGRWEARIGIP---G-SKHIYLGLFQSEEEAARSYDAALVRLRG 502 679*****.7*****8...3.6**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MHLLSGNWPL EDESSKNIAD GGTKSGGGVC DDCRHSKRRA RVVGYTYRDT ALSSTWAFYD 60 DTTGVEINAS KQSPLPHLHL RDKESLQQAN RDFVGVNWSM EQKDTRLSSL LSLGPMDSLT 120 DLPQSPFQEE AAAGGDNGYV RASQNMAANQ LQGLVVKGRV RNLDQPFYMP LRGVEIHPQP 180 ALYHPKDFVD EMLSPRQRHF QELNEQLRSR LAFAPGLPDP RASPASLSSG RTTFDSEGAC 240 TPAPLAVTST KNNDTVNEAS QNLEQEALED PLEDSGAIAM TSGAANVRLI KAEKAQPDHI 300 NERRCTASAD LQSKPVFRRP FTRSAGQGGP CRLGVSKGLP QKQQRVVANK AATGKVRSSK 360 YRGVTKHRRS GRWEAHVWVK ELGRQVYLGG YEQEEHAAEA YDVAILKCKG RRVSTNFEIA 420 RYADLLDCMD AISLEELIMA VRRQSQGFAR GTSSFRGVTR HPSGRWEARI GIPGSKHIYL 480 GLFQSEEEAA RSYDAALVRL RGSSAATNFA LSDYTGDLAA YHKMQQSVLG VSLFDSSGAA 540 SDTAILSRIL GVFLKGTASP ILTSGQQKLW CSPRLILQSS AAAKLLDSRG SHFENWIKHG 600 TPPEEGVVVE PAAVVKPSSA RPQRRAAAAR FLLKNEEMAD WDDSGEENEG PATSRRG*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MHLLSGNWPL EDESSKNIAD GGTKSGGGVC DDCRHSKRRA RVVGYTYRDT ALSSTWAFYD  60
DTTGVEINAS KQSPLPHLHL RDKESLQQAN RDFVGVNWSM EQKDTRLSSL LSLGPMDSLT  120
DLPQSPFQEE AAAGGDNGYV RASQNMAANQ LQGLVVKGRV RNLDQPFYMP LRGVEIHPQP  180
ALYHPKDFVD EMLSPRQRHF QELNEQLRSR LAFAPGLPDP RASPASLSSG RTTFDSEGAC  240
TPAPLAVTST KNNDTVNEAS QNLEQEALED PLEDSGAIAM TSGAANVRLI KAEKAQPDHI  300
NERRCTASAD LQSKPVFRRP FTRSAGQGGP CRLGVSKGLP QKQQRVVANK AATGKVRSSK  360
YRGVTKHRRS GRWEAHVWVK ELGRQVYLGG YEQEEHAAEA YDVAILKCKG RRVSTNFEIA  420
RYADLLDCMD AISLEELIMA VRRQSQGFAR GTSSFRGVTR HPSGRWEARI GIPGSKHIYL  480
GLFQSEEEAA RSYDAALVRL RGSSAATNFA LSDYTGDLAA YHKMQQSVLG VSLFDSSGAA  540
SDTAILSRIL GVFLKGTASP ILTSGQQKLW CSPRLILQSS AAAKLLDSRG SHFENWIKHG  600
TPPEEGVVVE PAAVVKPSSA RPQRRAAAAR FLLKNEEMAD WDDSGEENEG PATSRRG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-47	AP2 family protein