PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA66277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27437.3 Da PI: 9.3838 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.8 | 9.1e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrngi+KKA+ELSvLCdaeva+iifs +gkl+e+ PKA66277.1 9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEVALIIFSCRGKLFEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 92.5 | 7.2e-31 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ +++qel+kLk+++e+Lqr+qRhllGedL++LslkeLqqLe+qLe sl++ R+k++ l+l+q+ee q ke+ l ++nk+L++kle PKA66277.1 81 PNDHETLNWYQELSKLKAKYESLQRSQRHLLGEDLDELSLKELQQLERQLELSLTQARQKRTLLMLDQMEEIQIKERHLGDINKQLKHKLE 171 5678899*********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEVALIIFSC RGKLFEFGSP 60 DITKTLERYK RCTFTPQAID PNDHETLNWY QELSKLKAKY ESLQRSQRHL LGEDLDELSL 120 KELQQLERQL ELSLTQARQK RTLLMLDQME EIQIKERHLG DINKQLKHKL EIEGGSMRAI 180 QGSSWLQLDN EALSSCSRAR DPGPTLEIGR YHHYAPTGRE AAAGPRNGAS GNFMPGWAP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 6e-68 | MIKC_MADS family protein |