PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65974.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 30963.1 Da PI: 9.2963

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	147	201	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k PKA65974.1 147 RKKLRLSKEQSALLEDRFKEQSTLNPKQKQALAKQLKLRPRQVEVWFQNRRARTK 201 788899***********************************************98 PP
2	HD-ZIP_I/II	117.5	7.5e-38	147	236	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk kq+E+d+e L+r +++l++en+rL++e ++L+ +l PKA65974.1 147 RKKLRLSKEQSALLEDRFKEQSTLNPKQKQALAKQLKLRPRQVEVWFQNRRARTKVKQTEVDCELLRRFCESLTNENRRLHRELQDLK-AL 236 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MPKARNLNIN PSKNLSFSIF SSVFPFSSPP LPSPLNHSPL PVSLMNMDAG LVLRLGGAGE 60 TCIPTSDRRC WQQEFFSSIR SESTSPREPS LTLSLSETSY WQLPAEGSSS SPPLSSAVKK 120 ETDEAVSEDT EKVSPRGSDE EEYGSARKKL RLSKEQSALL EDRFKEQSTL NPKQKQALAK 180 QLKLRPRQVE VWFQNRRART KVKQTEVDCE LLRRFCESLT NENRRLHREL QDLKALKLAS 240 PAPLYVQIPA AATLTVCPSC EKAAAGDGAK VGAFSPATTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	204	RRARTKVKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	6e-44	HD-ZIP family protein