PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65658.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family BBR-BPC
Protein Properties Length: 300aa    MW: 33089.5 Da    PI: 9.8204
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind304.24.8e-9313001301
   GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdaki........rernlalsekkaavaerd..........maflqrdkalaernkalverdn 79 
                 mdd+++   +n+g y++p   lk nlglqlm ++ e d+k+                     + +r+          m+f  r+ + ++      +rd 
  PKA65658.1   1 MDDESTPGiQNWGgYFRPP-PLKGNLGLQLMPTVGECDTKPffsgsggaV---------GRGYFHREcsvaepsniqMDF-SREFWYHN------NRDA 82 
                 78887777899*9899988.9********************776555431.........233333443444444677999.89999999......4444 PP

   GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                 + +  +++ n  ++ +  + + l++ + +   +  +    + + v++ e    e++p++e+ + +k+++++++++++   k++k+ kk kk +++++++
  PKA65658.1  83 AKMLHVFQGNHHQH-SHGYGGLLPEPSAVSAAEAGTS-AHAFQMVQQVEAPREEKEPVVEEIDASKQETMPSRKRSKGPSKASKKPKKMKKASTPRDES 179
                 44333333333222.2233344555555554444222.1111222233333445677778888888888888777777777777666666688888888 PP

   GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                 +++s   r+++ekks+++v+ng+++D s++P+PvC+CtG+++qCY+WG GGWqSaCCtt+iSvyPLP+stkrrgaRiagrKmSqgafkk+LekLa+eG 
  PKA65658.1 180 TRPS--GRARSEKKSMEMVINGIDFDFSGMPAPVCTCTGQPQQCYRWGVGGWQSACCTTSISVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGQ 276
                 8888..69******************************************************************************************* PP

   GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
                 d+s p+DLk +W kHGtnkfvtir
  PKA65658.1 277 DFSSPIDLKPFWSKHGTNKFVTIR 300
                 ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDDESTPGIQ NWGGYFRPPP LKGNLGLQLM PTVGECDTKP FFSGSGGAVG RGYFHRECSV  60
AEPSNIQMDF SREFWYHNNR DAAKMLHVFQ GNHHQHSHGY GGLLPEPSAV SAAEAGTSAH  120
AFQMVQQVEA PREEKEPVVE EIDASKQETM PSRKRSKGPS KASKKPKKMK KASTPRDEST  180
RPSGRARSEK KSMEMVINGI DFDFSGMPAP VCTCTGQPQQ CYRWGVGGWQ SACCTTSISV  240
YPLPMSTKRR GARIAGRKMS QGAFKKVLEK LAGEGQDFSS PIDLKPFWSK HGTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.14e-74BBR-BPC family protein