PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64943.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 431aa MW: 47927.1 Da PI: 6.56

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	92	110	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cg+ F+++ L H+r PKA64943.1 92 CKECGREFPSWKALFGHMR 110 ******************8 PP
2	zf-C2H2	12.4	0.00047	280	302	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+k Fs+ L H +H PKA64943.1 280 YQCPACNKAFSSYQALGGHRASH 302 9************9999998887 PP
3	zf-C2H2	14.9	7.7e-05	350	372	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs+ L H r+H PKA64943.1 350 HECNICGKAFSSGQALGGHKRSH 372 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEKDKEPKKH KCRICSKCFP CGRSLGGHMR SHVHASCDDE LQKEKHDRSR GLQVGALGAS 60 YGLRENPKKT WRMSDFSDDD PSLPSSRREK LCKECGREFP SWKALFGHMR CHSDKNSRRS 120 SEAEEQHEQD QEKEAAASWS AQKVFFSSER DVIPSRKGRS KGTCSAIAVA AASSSSITEY 180 EQELEDVAIS LMMLSRGIEG YWASSAPASG ESFDRQSMVF EEDAFKRSES GELGCSEAAE 240 DSAEESRKRR NLDSARLGTK SERIDENGYN VFKENFEREY QCPACNKAFS SYQALGGHRA 300 SHKRIRGCCL PKNDNGNGGE NSSFDTEASD ELLTEMEETH PSLTKKRRIH ECNICGKAFS 360 SGQALGGHKR SHVVSNGETR SIELQMPAVA EVPELLDLNL PAPVDQESSN VKPWWAGGGI 420 MLEQHLVSLT S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEKDKEPKKH KCRICSKCFP CGRSLGGHMR SHVHASCDDE LQKEKHDRSR GLQVGALGAS  60
YGLRENPKKT WRMSDFSDDD PSLPSSRREK LCKECGREFP SWKALFGHMR CHSDKNSRRS  120
SEAEEQHEQD QEKEAAASWS AQKVFFSSER DVIPSRKGRS KGTCSAIAVA AASSSSITEY  180
EQELEDVAIS LMMLSRGIEG YWASSAPASG ESFDRQSMVF EEDAFKRSES GELGCSEAAE  240
DSAEESRKRR NLDSARLGTK SERIDENGYN VFKENFEREY QCPACNKAFS SYQALGGHRA  300
SHKRIRGCCL PKNDNGNGGE NSSFDTEASD ELLTEMEETH PSLTKKRRIH ECNICGKAFS  360
SGQALGGHKR SHVVSNGETR SIELQMPAVA EVPELLDLNL PAPVDQESSN VKPWWAGGGI  420
MLEQHLVSLT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	1e-22	C2H2 family protein