PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64579.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 359aa MW: 39965 Da PI: 6.6373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.1e-15	283	308	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++++G C+yG++C+FaHg PKA64579.1 283 FKTELCNKWQESGDCPYGAQCQFAHG 308 79***********************8 PP
2	zf-CCCH	19.9	1.3e-06	321	346	1	26
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 yktelCr + G tC+yG rC+F H+ PKA64579.1 321 YKTELCRMVLS-GdTCPYGHRCHFRHS 346 9****8888.56********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEQELASGAN ADSCVPSSVP PLSFVPPDQE FDTPFLSSGS DNILLDGYQL MSSPEVIPCA 60 ITSNDQVPDT GPVLLSPSPA SFVEDDQQNV EVESRHYLAR LSLQYQRIAD RYELCLSQLH 120 DAVLEAEAIR LQNAQLRRAN DELSRSLNLT SGKHNNRYEI STGHPPVLLL NDQFRRLSLA 180 DHPPDGESPT SVFGFHENRR GRRCCGIDGK PLMLPKSISV RSSGYLKIHP PGIGGSAPNR 240 SNRLRSPTPV MQQKVFLGAW GSKKEGGEME EALELEAYNQ GMFKTELCNK WQESGDCPYG 300 AQCQFAHGIS ELRPVIRHPR YKTELCRMVL SGDTCPYGHR CHFRHSLSPV DRLSLRRPT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEQELASGAN ADSCVPSSVP PLSFVPPDQE FDTPFLSSGS DNILLDGYQL MSSPEVIPCA  60
ITSNDQVPDT GPVLLSPSPA SFVEDDQQNV EVESRHYLAR LSLQYQRIAD RYELCLSQLH  120
DAVLEAEAIR LQNAQLRRAN DELSRSLNLT SGKHNNRYEI STGHPPVLLL NDQFRRLSLA  180
DHPPDGESPT SVFGFHENRR GRRCCGIDGK PLMLPKSISV RSSGYLKIHP PGIGGSAPNR  240
SNRLRSPTPV MQQKVFLGAW GSKKEGGEME EALELEAYNQ GMFKTELCNK WQESGDCPYG  300
AQCQFAHGIS ELRPVIRHPR YKTELCRMVL SGDTCPYGHR CHFRHSLSPV DRLSLRRPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	5e-60	C3H family protein