PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63561.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 290aa MW: 32125.8 Da PI: 8.6527

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	16	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ede+l +av +G+++W +I+r ++ gR+ +c++rw ++l PKA63561.1 16 KGSWRPQEDEKLTNAVGIHGPRNWPLISRSVP-GRSSRSCRLRWCNHL 62 799***************************.***********96 PP
2	Myb_DNA-binding	46.1	1.2e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE e +v+ ++++G++ W+ Iar + gR+++ +k++w++ PKA63561.1 69 NPFTAEENETIVREHREHGNK-WSVIARSLK-GRSDNAIKNHWNS 111 68*****************.****9.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MASPEGRSRG EVEEVKGSWR PQEDEKLTNA VGIHGPRNWP LISRSVPGRS SRSCRLRWCN 60 HLSPDMAHNP FTAEENETIV REHREHGNKW SVIARSLKGR SDNAIKNHWN SALRRKHRSR 120 SAGDAAAGDR ISGDRFDEGL SLSSQNPSMS EFCGSNRNSH PTAAPAPADQ IRAMKRRTDS 180 NDVGSQVGPL TLRLFPFVPD ANPSPSAAVA EPAAPSPINA EYRSVIQETV RREVDSYLNE 240 LERRGMILML PGPEGAQKAA LMKIGMAMVD YWREENPSSE SECNPKSVNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-47	MYB family protein