PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63447.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 267aa MW: 30273.2 Da PI: 8.128

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	56	80	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f+ C+ Gd C+FaHg PKA63447.1 56 FKTRLCDRFQY-DCCPNGDECNFAHG 80 69999999998.99***********8 PP
2	zf-CCCH	22	2.9e-07	124	147	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++ Cr f+ + C++GdrC+FaH PKA63447.1 124 KHKVCRKFHSGEVCPFGDRCCFAH 147 8899****66********** PP
3	zf-CCCH	34.6	3.3e-11	170	195	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ +G C+yGd C++aHg PKA63447.1 170 WKTKLCHKFSTSGRCPYGDMCNYAHG 195 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MDHYLGFRPP LPFEASVAQE QRTSHEFSWL LPQMPPLLPQ DNATRNNPSR PTSGCFKTRL 60 CDRFQYDCCP NGDECNFAHG IEDLRRPLGA RFASKCRSAW PEQIHIPPNY KEGTYLGDEW 120 KLQKHKVCRK FHSGEVCPFG DRCCFAHAKP GLLQDSTGGG YVSNHNSLYW KTKLCHKFST 180 SGRCPYGDMC NYAHGYGELR KLGGDHVETK GKDVEDAAPK IGSSFHFDDV LPKTKTEPVS 240 VLQVETKKVR TLTLEKTKQI YGDWIDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	7e-30	C3H family protein