PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63162.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 197aa MW: 22948.8 Da PI: 5.4706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++v+++G ++W+ Ia+ g++Rt+k+c++rw +yl PKA63162.1 11 KGPWTEAEDMQLACYVELFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 58 79********************************************97 PP
2	Myb_DNA-binding	49.9	7.3e-16	65	107	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr+ +eE+e +++++ ++G++ W++Iar ++ gRt++++k++w++ PKA63162.1 65 GRMAPEEEETILNLHSLWGNR-WSRIARNLP-GRTDNEIKNYWRT 107 78889**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MAGEDQSTIK KGPWTEAEDM QLACYVELFG DRRWDFIAKV SGLKRTGKSC RLRWVNYLQP 60 GLKHGRMAPE EEETILNLHS LWGNRWSRIA RNLPGRTDNE IKNYWRTRMR KKAQEWRKTS 120 SSSSPSSLNM TDVGIEDNMP NIIFVAEVEE EEEADMDYSL DQIWNEVGEL ETPSINFEGS 180 YKKEFNKSRI SIRTSSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-60	MYB family protein