PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63049.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

M-type_MADS

Protein Properties

Length: 488aa MW: 53613.5 Da PI: 8.28

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	102	150	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +WT+ Ed+ + +a + +G +W+++a+ +g g+t+ ++ ++q +l PKA63049.1 102 KWTAREDKEFERALATFGEQtpnRWERVAAAVGGGKTAADVGRHYQLLL 150 7***************99************************875 PP
2	SRF-TF	44.3	2.2e-14	229	268	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r t+ kRr g++KK ELSvLC++ ++ +++++ PKA63049.1 229 ITNEATRRATLKKRRRGLMKKVRELSVLCGVSACAVVYAP 268 8999********************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MGPGDSRLSP FPFSEHKHRT LMPRYPLNSD CNAGCLTSNC LHPSSKTEHR HLNNGLLEGK 60 NEDRLSSIEE PYRPPAILAK MRASFRPLGF LCSMAASSPA AKWTAREDKE FERALATFGE 120 QTPNRWERVA AAVGGGKTAA DVGRHYQLLL DDIDSIESGR VPFPNYRTPQ APATTAGRGG 180 GAAAAILSHD CHRFQLDDRN ARVDLCLEPK DPSSPVPAMA RKKISLAYIT NEATRRATLK 240 KRRRGLMKKV RELSVLCGVS ACAVVYAPPD PKPEVWPSTE EAAEILRKFC CMPDVDKARK 300 MMNQESFLLQ RQNKLQEQLR RLTHENDELA AANLLRQCLA GRPASTLCRE EIFVLLCLIE 360 RRSKAVQVRL DQLRAQAERF GSSPEIYLPG GQSPPPLPLP APLMLPAPLP LQVKDFKDPI 420 GFDSAAIEAM RRCDWLSGGV SGDHAPEVTG GELQIMPYAQ GPVAPGCASA SGGFDDMLAM 480 FIDPAIYI

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MGPGDSRLSP FPFSEHKHRT LMPRYPLNSD CNAGCLTSNC LHPSSKTEHR HLNNGLLEGK  60
NEDRLSSIEE PYRPPAILAK MRASFRPLGF LCSMAASSPA AKWTAREDKE FERALATFGE  120
QTPNRWERVA AAVGGGKTAA DVGRHYQLLL DDIDSIESGR VPFPNYRTPQ APATTAGRGG  180
GAAAAILSHD CHRFQLDDRN ARVDLCLEPK DPSSPVPAMA RKKISLAYIT NEATRRATLK  240
KRRRGLMKKV RELSVLCGVS ACAVVYAPPD PKPEVWPSTE EAAEILRKFC CMPDVDKARK  300
MMNQESFLLQ RQNKLQEQLR RLTHENDELA AANLLRQCLA GRPASTLCRE EIFVLLCLIE  360
RRSKAVQVRL DQLRAQAERF GSSPEIYLPG GQSPPPLPLP APLMLPAPLP LQVKDFKDPI  420
GFDSAAIEAM RRCDWLSGGV SGDHAPEVTG GELQIMPYAQ GPVAPGCASA SGGFDDMLAM  480
FIDPAIYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	243	RKKISLAYITNEATRRATLKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-29	M-type_MADS family protein