PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA63042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24600.8 Da PI: 9.1701 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46 | 6.8e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r t+ kRr g++KK ELSvLC++ ++ +++++ PKA63042.1 11 ITNEATRRATLKKRRRGLMKKVRELSVLCGVSACAVVYAP 50 8999********************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MARKKISLAY ITNEATRRAT LKKRRRGLMK KVRELSVLCG VSACAVVYAP PDPKPEVWPS 60 TEEAAEILRK FCCMPDVDKA RKMMNQESFL LQRQNKLQEQ LRRLTHENDE LAAANLLRQC 120 LAGRPASTLC REEVFVLLCL IERRSKAVQV RLDQLRAQAE RFGSSPEIYL PGGQSPPSLP 180 LPAPLMLPAP SPLQVKDFTD PIGFDSAAIE AMLLCDWLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKISLAYITNEATRRATLKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-31 | M-type_MADS family protein |