PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA62701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 25240.3 Da PI: 8.6615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++I++ ++ gR++k+c++rw + PKA62701.1 9 KGSWSPEEDAMLMRLVELHGARNWTLISAGIP-GRSGKSCRLRWCNQ 54 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +v a++++G++ W+tIar ++ gRt++ +k++w++ PKA62701.1 63 PFSPAEDAVIVAAHARYGNK-WATIARLLP-GRTDNAIKNHWNST 105 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGESEEKIKG SWSPEEDAML MRLVELHGAR NWTLISAGIP GRSGKSCRLR WCNQLSPEVH 60 HRPFSPAEDA VIVAAHARYG NKWATIARLL PGRTDNAIKN HWNSTLRRRR RRRRAAAAAS 120 GSASVSALSG PEESESESGG KRQCLREDSS TADPETALSL SPPGESTAAV AAGDGGGGAG 180 RRWEDELKDP CVVLMMRDMI AEEVRRYMSR LRVEAGGGLP VIIKAEQGSN GQD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | RRRRRR |
2 | 107 | 113 | RRRRRRR |
3 | 107 | 114 | RRRRRRRR |
4 | 108 | 113 | RRRRRR |
5 | 108 | 114 | RRRRRRR |
6 | 108 | 115 | RRRRRRRR |
7 | 109 | 114 | RRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-54 | MYB family protein |