PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62541.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 463aa MW: 50973.5 Da PI: 7.2473

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125	3e-39	174	250	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC +dl+ ak+yhr+h+vCe hsk+p+v+vsgle rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ PKA62541.1 174 CQVEGCCVDLAAAKDYHRKHRVCESHSKSPKVIVSGLECRFCQQCSRFHDLSEFDQRKRSCRRRLSDHNARRRKPQP 250 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MDWNHKDPLQ WDWENSALFN GKEDEISKST GENGWKAEVG VISNSSVYSS GSGTFCISDL 60 GNCSSKSSIS VSVGSSPKVG NNISEVNFEA AEVLIDNQNN NNEFDQENVT QPSPILVGRA 120 SAAEPPIGLK LGKRTYFENF GAANIKTTSV SMTKPAASVK RSRGGHQAIQ LSYCQVEGCC 180 VDLAAAKDYH RKHRVCESHS KSPKVIVSGL ECRFCQQCSR FHDLSEFDQR KRSCRRRLSD 240 HNARRRKPQP DSITFTSSGF SSSSYDERQQ MNFFLNLAPY SHSRGSTSSL WGDSRGFSLS 300 VKKGSWINST KVSVDGQLSI PNLSNTVSAP RDDYNKMISF KSIANEVLNQ GLEASVSASN 360 MNGAPDLRRA LSLLSSDSWA PPCSEKSSTI VQFASSGPAV GSHPPNLVME SEPECWPYDH 420 FLADQALNFR LIGSQVHDYN NLNRPPYENP LFEANGQFLE FKT

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MDWNHKDPLQ WDWENSALFN GKEDEISKST GENGWKAEVG VISNSSVYSS GSGTFCISDL  60
GNCSSKSSIS VSVGSSPKVG NNISEVNFEA AEVLIDNQNN NNEFDQENVT QPSPILVGRA  120
SAAEPPIGLK LGKRTYFENF GAANIKTTSV SMTKPAASVK RSRGGHQAIQ LSYCQVEGCC  180
VDLAAAKDYH RKHRVCESHS KSPKVIVSGL ECRFCQQCSR FHDLSEFDQR KRSCRRRLSD  240
HNARRRKPQP DSITFTSSGF SSSSYDERQQ MNFFLNLAPY SHSRGSTSSL WGDSRGFSLS  300
VKKGSWINST KVSVDGQLSI PNLSNTVSAP RDDYNKMISF KSIANEVLNQ GLEASVSASN  360
MNGAPDLRRA LSLLSSDSWA PPCSEKSSTI VQFASSGPAV GSHPPNLVME SEPECWPYDH  420
FLADQALNFR LIGSQVHDYN NLNRPPYENP LFEANGQFLE FKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	RKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-51	SBP family protein