PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA62537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28306 Da PI: 10.1036 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3.1e-18 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s r t+ kRr+g+lKKA+ELS+LCd+++++i+f+ PKA62537.1 11 IANDSARRATLKKRRKGLLKKASELSTLCDVKACLILFA 49 89**********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MARKKVKLEW IANDSARRAT LKKRRKGLLK KASELSTLCD VKACLILFAA GEPQPEVWPS 60 HHEAARILAK LKRLPEMEQG KKMMNQEGFM RQRITKLQEQ LQKQERENRE LETTLLMYQG 120 LMGKTMSDVS IKDLTSLAWL IELKVNQVRK RLDALRKNAT PPPQQQQPAA AAAAVAVKKE 180 NASPQLPPAA AEKTALEVAM EELQKQDWFS EIMMNPLAAH EEMMGHHLSF LELAGSGFLG 240 GAWPDAYFPV N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLEWIANDSARRATLKKRR |
2 | 22 | 26 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-32 | M-type_MADS family protein |