PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62133.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

YABBY

Protein Properties

Length: 263aa MW: 28669.2 Da PI: 6.3308

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	38.8	3.4e-12	69	148	24	96
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh.ldeslkee.....lleelkvee.enlksnvekeesastsv 96 vsvP t l+++vtvrCGhC++ll vn++ a ++ h ++++ ++ ++ ++ + ++s+v ++++ ++s+ PKA62133.1 69 VSVPGTNLLNIVTVRCGHCANLLPVNINGALPQTIPPPHpQGHNVGQQgshleCESSTRCNRiSLFNSMVNNDQHDMNST 148 9***************************9985554444402333333333322222222222022333333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MHTEMLDLIT YASNTEKRNA KAEMDFIAQQ IADHLFDFSL YTMSHLCRNA NEASHFLAQL 60 ASSGDFTWVS VPGTNLLNIV TVRCGHCANL LPVNINGALP QTIPPPHPQG HNVGQQGSHL 120 ECESSTRCNR ISLFNSMVNN DQHDMNSTHQ PSLTPLTELL LNSSPLSNSS STVTPCLTAA 180 QQRALAEQLL NRSPLSNSNS TVTPYLTAAQ QRTFAEQLLN SSPLSKQLLN SGPLPNSYST 240 EPLPEQLLNS SPCLIAAQQR PLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-09	YABBY family protein