PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61273.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Protein Properties

Length: 592aa MW: 66139.9 Da PI: 5.876

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.2	5.3e-12	46	115	16	89
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l +p + a + k +k + led++++sW vk+ + ++ ++kGW +Fv a+ + +g+fv+F+++g PKA61273.1 46 LFVPPSIAITL--KDMDGKYVNLEDSDSNSWIVKM--SMVEDSLAFEKGWHDFVVAHSISVGEFVIFTYVGGLM 115 66677766444..3345778*************..77777899*********************998533 PP
2	B3	30.9	4.8e-10	507	591	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ l lp + ++ k e k ++led+ r+W v + ++ +++ + +GW +F++an ++ gD + ++l++++e ++v++++ PKA61273.1 507 VRNFLELPEELISGSRRLKLERKVVVLEDPLMRRWPVLY--HQGISHVGFIGGWVDFARANSICKGDACELELVDEKELVFRVQIRK 591 345588888888777555567789*************..77777888889*******************99899888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MKAKEDTIAN GQQNKRGRKR PSSSPLSPPV PISFFKIMIG DFRDVLFVPP SIAITLKDMD 60 GKYVNLEDSD SNSWIVKMSM VEDSLAFEKG WHDFVVAHSI SVGEFVIFTY VGGLMFTARI 120 FGTSSLERLN FPAKIVESGK EMVVAELNFR KKKTCKASDD KHCLASHNPL NLEREKEAAP 180 CDLPNENANG NDSICRVVSV VPSTVGKFLH HHTCTKVHNK ALEHDSSSLE DLIAVNVFEL 240 PKSDGESLAA IGPKSSRNCV QEKKQGAGKS EIEELTPGVQ VSNVEDTRRN SEKMGPNFSY 300 HFRMLGNESD NKNKPAFLNI SDSKCTTKKD CIELEGFSDK RSHKIGLRDS VCEKATYHKM 360 EEIELEEFPD ELFDKADCLH DTVEDKLKKF ADSFGVVEPG CEDSLSENDK VNFLLETHAS 420 CESEVPLPST PTVDCAKYKK ENMEPANEVD TQVKGSVLAA SPYIDENNVT PCSYQKSQTE 480 VTIERTGSVK SSSCGRRSFT IQLSHDVRNF LELPEELISG SRRLKLERKV VVLEDPLMRR 540 WPVLYHQGIS HVGFIGGWVD FARANSICKG DACELELVDE KELVFRVQIR KA

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MKAKEDTIAN GQQNKRGRKR PSSSPLSPPV PISFFKIMIG DFRDVLFVPP SIAITLKDMD  60
GKYVNLEDSD SNSWIVKMSM VEDSLAFEKG WHDFVVAHSI SVGEFVIFTY VGGLMFTARI  120
FGTSSLERLN FPAKIVESGK EMVVAELNFR KKKTCKASDD KHCLASHNPL NLEREKEAAP  180
CDLPNENANG NDSICRVVSV VPSTVGKFLH HHTCTKVHNK ALEHDSSSLE DLIAVNVFEL  240
PKSDGESLAA IGPKSSRNCV QEKKQGAGKS EIEELTPGVQ VSNVEDTRRN SEKMGPNFSY  300
HFRMLGNESD NKNKPAFLNI SDSKCTTKKD CIELEGFSDK RSHKIGLRDS VCEKATYHKM  360
EEIELEEFPD ELFDKADCLH DTVEDKLKKF ADSFGVVEPG CEDSLSENDK VNFLLETHAS  420
CESEVPLPST PTVDCAKYKK ENMEPANEVD TQVKGSVLAA SPYIDENNVT PCSYQKSQTE  480
VTIERTGSVK SSSCGRRSFT IQLSHDVRNF LELPEELISG SRRLKLERKV VVLEDPLMRR  540
WPVLYHQGIS HVGFIGGWVD FARANSICKG DACELELVDE KELVFRVQIR KA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	1e-07	B3 family protein