PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59425.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 327aa MW: 35935.3 Da PI: 9.1844

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.1	2.6e-19	48	127	2	71
trihelix 2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt qe+l+Li+a+r +++r r++ +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++ PKA59425.1 48 WTIQETLLLITAKRLDDDRRTRAAgageasatprSAEQRWKWVENYCWKHGCLRSQNQCNDKWDNLLRDYKKVRDYESRF 127 ************88877777544555666666***************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MSSEPSSIGP TALPILEHRR PPPAAGAPTS PSPSAALLTT REYRKGNWTI QETLLLITAK 60 RLDDDRRTRA AGAGEASATP RSAEQRWKWV ENYCWKHGCL RSQNQCNDKW DNLLRDYKKV 120 RDYESRFAAG SSGVAGGDQP PSYWSLERHE RKERNLPTNL ALDVYDALAD VLSRRASRRN 180 SASGATPVPL HLPLPQPPPP LPPPPAPALP SLQASVSVET VPEESSDTEG SGGRDDAAPP 240 PARKRRRGLG SSVVRGAAEI ARTLMACEEK REQRHRDLME MEERRLRMEE ERTEMNRQAV 300 AGLIAAVNGL SAAIHTLVAD NRTGDGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	248	ARKRRRG
2	243	247	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-45	Trihelix family protein