PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59100.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 725aa MW: 79175.3 Da PI: 6.7542

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.5e-24	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L gD v+F + +++el+ PKA59100.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQQ-RPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL--RGDDGELR 244 99**************************97433.45679*********************************************..3489999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PKA59100.1 245 LGIRRA 250 ***997 PP
2	Auxin_resp	108.2	9e-36	278	358	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++a+s+ks+F+v Y+Pr+ +seF+++ +k++k++++ +s G Rfkm+f+++d++err++G+v++vs+ldpvrWp+SkWr+L PKA59100.1 278 VDAISSKSMFQVNYKPRVNQSEFIIPHWKFRKSCNHAISGGARFKMRFDSDDAAERRYTGLVTAVSELDPVRWPGSKWRCL 358 6799****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MGIDLNTIEE EEEESAEIPA TLQQQPPTAG PGSVCLELWH ACAGPRISLP RKGSVVVYLP 60 QGHLEHLAGG SDGATGGMML RYDVPPHVFC HVVDVRLQAE AATDEVYAQL SLVAEDEGVE 120 KQMQGGAERE GEEVDSIDVG GKSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY 180 EQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVCG DAVLFLRGDD 240 GELRLGIRRA SQLKLNISYS LPPNQSLNVG VGDLSSIVDA ISSKSMFQVN YKPRVNQSEF 300 IIPHWKFRKS CNHAISGGAR FKMRFDSDDA AERRYTGLVT AVSELDPVRW PGSKWRCLVV 360 RWDEDDGVDC TRQNRVSPWE IEATGAVSSP NSLLLSGSKR ARLGVPSSNA DYSHPNGSGY 420 PDLVESARFH KVLQGQEILG FKAPCNGSDG TLSQVSELRN HHFPELRRCV ANPNSCMVAS 480 SGAPTRVPVG NSDFLFKGIG FEESLRFHKV LQGQEIVPVI PSYRGMVIEN YKENGGIKIY 540 ETHAGAPRCS APLQGYCTLM QPCTSSAQVS SPSSVLMFQQ ASSQLPCSPY GANEREKAEN 600 SNSHIGQPTS LSKSYYLGKV MSSEHCEIGS GSTQTFQKNF MSNIIHGRES SCRLFGFPLT 660 DKIPVASMVA GSLSDPPSLM EGNIDSCFST QRPQILTKAA GHGCTRLGVP IVQELTSLVQ 720 PASFH

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MGIDLNTIEE EEEESAEIPA TLQQQPPTAG PGSVCLELWH ACAGPRISLP RKGSVVVYLP  60
QGHLEHLAGG SDGATGGMML RYDVPPHVFC HVVDVRLQAE AATDEVYAQL SLVAEDEGVE  120
KQMQGGAERE GEEVDSIDVG GKSPIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
EQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVCG DAVLFLRGDD  240
GELRLGIRRA SQLKLNISYS LPPNQSLNVG VGDLSSIVDA ISSKSMFQVN YKPRVNQSEF  300
IIPHWKFRKS CNHAISGGAR FKMRFDSDDA AERRYTGLVT AVSELDPVRW PGSKWRCLVV  360
RWDEDDGVDC TRQNRVSPWE IEATGAVSSP NSLLLSGSKR ARLGVPSSNA DYSHPNGSGY  420
PDLVESARFH KVLQGQEILG FKAPCNGSDG TLSQVSELRN HHFPELRRCV ANPNSCMVAS  480
SGAPTRVPVG NSDFLFKGIG FEESLRFHKV LQGQEIVPVI PSYRGMVIEN YKENGGIKIY  540
ETHAGAPRCS APLQGYCTLM QPCTSSAQVS SPSSVLMFQQ ASSQLPCSPY GANEREKAEN  600
SNSHIGQPTS LSKSYYLGKV MSSEHCEIGS GSTQTFQKNF MSNIIHGRES SCRLFGFPLT  660
DKIPVASMVA GSLSDPPSLM EGNIDSCFST QRPQILTKAA GHGCTRLGVP IVQELTSLVQ  720
PASFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-170	ARF family protein