PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA58789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 17962.3 Da PI: 7.4673 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.8e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrr+C+++C++apyf +e+ +++fa++hk+FGasn +kll+a+p +r +a+ ++ yeA+ar++dPvyG+v++i++lq+q+++l+a+l++++ PKA58789.1 7 PCGACKFLRRRCPPNCIFAPYFGSENdAARFAVIHKVFGASNTSKLLSAIPAGDRCEAAVTISYEAQARLQDPVYGCVAHIFALQRQVASLQAQLVQAR 105 7*********************876659********************************************************************999 PP DUF260 99 ee 100 ++ PKA58789.1 106 TQ 107 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence |
MAGAGSPCGA CKFLRRRCPP NCIFAPYFGS ENDAARFAVI HKVFGASNTS KLLSAIPAGD 60 RCEAAVTISY EAQARLQDPV YGCVAHIFAL QRQVASLQAQ LVQARTQLAH LDRRQQWLGF 120 APNYHFMEED GSQRQQAMII ESDADHPHDD PSTIISWSSQ VLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-47 | LBD family protein |