PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58012.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 349aa MW: 35629.8 Da PI: 4.5916

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	69	174	7	95
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssssasnsssg 88 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt + ++ +a+ s ++a+++s + PKA58012.1 69 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQAEPAIIAATGTgtvpaiatnvggtlkipTEAPS---SAAVSDNAAAADSGE 164 9**********************************************************5555554444444433211111...111111111111222 PP TCP 89 ...kaaksaa 95 ++++++ PKA58012.1 165 dstRKRRKKL 174 1112222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDSQMQEKED EDDRAAAYAG ARSSGPATAA AEGETALGGS VTMHRLIMPK PEPMEFLGAM 60 PIIRQPPGRT KDRHTKVEGR GRRIRMPAAC AARIFQLTRE LGHKSDGETI RWLLQQAEPA 120 IIAATGTGTV PAIATNVGGT LKIPTEAPSS AAVSDNAAAA DSGEDSTRKR RKKLQPTRPV 180 APANAAYYPG GGGGCGGGGG SVSLSTGLAP IITATPGMLP VWAFGGGATG SILPPGPVWM 240 IPQNSPHAGP SAQAPTPVWT FPAPAQVMNL AGRQVGASPV FQGVVPGLNL DAGPADIQPA 300 ATAPAEHGAA GTNVAASEEA SKTIDAELGE EEEEDYDDND EEAEPLAGD

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDSQMQEKED EDDRAAAYAG ARSSGPATAA AEGETALGGS VTMHRLIMPK PEPMEFLGAM  60
PIIRQPPGRT KDRHTKVEGR GRRIRMPAAC AARIFQLTRE LGHKSDGETI RWLLQQAEPA  120
IIAATGTGTV PAIATNVGGT LKIPTEAPSS AAVSDNAAAA DSGEDSTRKR RKKLQPTRPV  180
APANAAYYPG GGGGCGGGGG SVSLSTGLAP IITATPGMLP VWAFGGGATG SILPPGPVWM  240
IPQNSPHAGP SAQAPTPVWT FPAPAQVMNL AGRQVGASPV FQGVVPGLNL DAGPADIQPA  300
ATAPAEHGAA GTNVAASEEA SKTIDAELGE EEEEDYDDND EEAEPLAGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-50	TCP family protein