PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58008.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 687aa MW: 74505.3 Da PI: 5.4545

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	504	549	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PKA58008.1 504 NHVEAERMRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 549 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MNLWTDDNAS MMEAFMATTD LQGFPWTPTP ALAAHVPSSM SGLVVSDPCK NMPPTAASPA 60 YFNQDTLQQR LQMLIEGARE GWAYAIYWQP SMDVSSGATL LGWGDGYYKG CEEDKRKRKS 120 NTAASAEEQE HRKRVLRELN SLISGGAAGS SPDDAVEEEV TDTEWFFLVS MTQSFVNGAG 180 LPGLALFSGA PSWTAGGEHL AVAPCERARQ AQGFGIQTLV CVPVGGGVIE LGSTEFIFHS 240 AEIMSNVRVL FNFNSIESTD GGGGSGGSGG NGGSWLRSQP LTPAVADQGE TDPSVLWISD 300 PSMLEIKDSV SPSAAEISAS KSPIQLDNPS ASSLTEARNS IQFPQPQHSN HRQSPQQQPN 360 QQSIYSRDIH FSDFGLNAAA PSQPFKPEPG DILNFGESQR NSSPAGIFSQ QRIPADDKKN 420 KKSAVASTSR GSNEEGMLSF SSAPTRIIST TQANPSASAA AGESDHSDIE ASVREVESSR 480 VVEPEKRPRK RGRKPANGRE EPLNHVEAER MRREKLNQRF YALRAVVPNV SKMDKASLLG 540 DAISYINELR SKLQASEVDK DTLQSQLEAA KKELDAAPAT RPLPSSPLPE QDLKLTNGHR 600 RNPVMEIEVK TVGFEAVIRI QCQRRNHPAA RLTAALKELD LELYCASVSV VKDLMILQAT 660 VNISSCRYTQ EQLRGLLLSR MAEPLLH

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MNLWTDDNAS MMEAFMATTD LQGFPWTPTP ALAAHVPSSM SGLVVSDPCK NMPPTAASPA  60
YFNQDTLQQR LQMLIEGARE GWAYAIYWQP SMDVSSGATL LGWGDGYYKG CEEDKRKRKS  120
NTAASAEEQE HRKRVLRELN SLISGGAAGS SPDDAVEEEV TDTEWFFLVS MTQSFVNGAG  180
LPGLALFSGA PSWTAGGEHL AVAPCERARQ AQGFGIQTLV CVPVGGGVIE LGSTEFIFHS  240
AEIMSNVRVL FNFNSIESTD GGGGSGGSGG NGGSWLRSQP LTPAVADQGE TDPSVLWISD  300
PSMLEIKDSV SPSAAEISAS KSPIQLDNPS ASSLTEARNS IQFPQPQHSN HRQSPQQQPN  360
QQSIYSRDIH FSDFGLNAAA PSQPFKPEPG DILNFGESQR NSSPAGIFSQ QRIPADDKKN  420
KKSAVASTSR GSNEEGMLSF SSAPTRIIST TQANPSASAA AGESDHSDIE ASVREVESSR  480
VVEPEKRPRK RGRKPANGRE EPLNHVEAER MRREKLNQRF YALRAVVPNV SKMDKASLLG  540
DAISYINELR SKLQASEVDK DTLQSQLEAA KKELDAAPAT RPLPSSPLPE QDLKLTNGHR  600
RNPVMEIEVK TVGFEAVIRI QCQRRNHPAA RLTAALKELD LELYCASVSV VKDLMILQAT  660
VNISSCRYTQ EQLRGLLLSR MAEPLLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	494	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-154	bHLH family protein