PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57881.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 1112aa MW: 123405 Da PI: 6.6897

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	7.9e-23	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l PKA57881.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDDKQQL 230 99***************************954.4444.49********************************************..4567778 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PKA57881.1 231 LLGIRRA 237 99997 PP
2	Auxin_resp	121.4	6.6e-40	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PKA57881.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYNKAVYgHQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1112 aa Download sequence
MMMKGSASSG VAAAAPAMPG GDGGEKKTIN PELWHACAGP LVTLPPVGSL VVYFPQGHSE 60 QVAASMQKDI DAHVPNYPNL PAKLICHLHN VTLHADTETD EVYAQMTLQP VNSYDEKALL 120 ASDLALKANK PQTDFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELQARD 180 LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDDKQQL LLGIRRANRQ 240 PTNISSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYNKAVYGHQ 300 LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE SAPGERRNRV 360 SLWEIEPVAA PFFICPPPFF RTKRPRQPGM LEDQSSEMEN LFKRAMPWLG EEICIKDAQS 420 QNTVMPGLSL AQWMSMQQNP LLSSSLMQPD YLCSLPRPVV QSVGANDLSR QFGLQAQLLQ 480 QNDLHVRLPQ VAQQLDSLPK NIQTPLNQLG GVSQPQQQMQ DINMQQRPQI INQTVSLNQT 540 PSPLQHQQPL FQNNLSPSRI LLQNQIPQQQ SLMQNQHILQ TSVTNNHTLQ QQQQMQHQNQ 600 QQQPAQQLQQ NRIPLQVANQ TNQQLQLSEH QLQLQLLQKL QQQQFQQQSL LSQSMLQQSQ 660 PPQIQEHQIS LLETSHHLAY ANPSSQPQSI GTRAQQSFQL LQQKPQQQQI SLPELPVTVP 720 PAPSTNIFST ANSLTAGGTQ PLLADDVPIS STSASPNTCA VLTQPALNRI SSHNIVSVDK 780 SAPSAVTILN TSPRIAKDLT KSEQNVKPSV PISKMQGQGV APQVYLNNTT QMDYLDSSSS 840 ATSVCLSQND GSLQQNLPFS PLHQPSLFRD VLPDNVVHGT DPRNNTLFGV NIDGPLEIPL 900 STDPLLENNI DTGKYPSQVS GNAVANYATS KDVHQEISSM ASQSFGVADM AFNSIDSTIT 960 DSNILNRNSW GPAQFQRMRT YTKVYKRGAV GRSLDITRYS GYDELKRDLV RMFSIEGQLE 1020 ERQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRYIRILS PQEVQQMSLD GDLGNSILPN 1080 QAGSSSDGGN AWRGQCDQNS GNPSAGSYDH LD

Sequence ? help Back to Top

Protein Sequence Length: 1112 aa Download sequence

MMMKGSASSG VAAAAPAMPG GDGGEKKTIN PELWHACAGP LVTLPPVGSL VVYFPQGHSE  60
QVAASMQKDI DAHVPNYPNL PAKLICHLHN VTLHADTETD EVYAQMTLQP VNSYDEKALL  120
ASDLALKANK PQTDFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELQARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDDKQQL LLGIRRANRQ  240
PTNISSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYNKAVYGHQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE SAPGERRNRV  360
SLWEIEPVAA PFFICPPPFF RTKRPRQPGM LEDQSSEMEN LFKRAMPWLG EEICIKDAQS  420
QNTVMPGLSL AQWMSMQQNP LLSSSLMQPD YLCSLPRPVV QSVGANDLSR QFGLQAQLLQ  480
QNDLHVRLPQ VAQQLDSLPK NIQTPLNQLG GVSQPQQQMQ DINMQQRPQI INQTVSLNQT  540
PSPLQHQQPL FQNNLSPSRI LLQNQIPQQQ SLMQNQHILQ TSVTNNHTLQ QQQQMQHQNQ  600
QQQPAQQLQQ NRIPLQVANQ TNQQLQLSEH QLQLQLLQKL QQQQFQQQSL LSQSMLQQSQ  660
PPQIQEHQIS LLETSHHLAY ANPSSQPQSI GTRAQQSFQL LQQKPQQQQI SLPELPVTVP  720
PAPSTNIFST ANSLTAGGTQ PLLADDVPIS STSASPNTCA VLTQPALNRI SSHNIVSVDK  780
SAPSAVTILN TSPRIAKDLT KSEQNVKPSV PISKMQGQGV APQVYLNNTT QMDYLDSSSS  840
ATSVCLSQND GSLQQNLPFS PLHQPSLFRD VLPDNVVHGT DPRNNTLFGV NIDGPLEIPL  900
STDPLLENNI DTGKYPSQVS GNAVANYATS KDVHQEISSM ASQSFGVADM AFNSIDSTIT  960
DSNILNRNSW GPAQFQRMRT YTKVYKRGAV GRSLDITRYS GYDELKRDLV RMFSIEGQLE  1020
ERQRIGWKLV YVDHENDVLL VGDDPWEEFV NCVRYIRILS PQEVQQMSLD GDLGNSILPN  1080
QAGSSSDGGN AWRGQCDQNS GNPSAGSYDH LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein