PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57553.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 348aa MW: 37990 Da PI: 10.4932

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.9e-19	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l +vk++G ++W++I++ ++ gR++k+c++rw + PKA57553.1 35 KGPWSPEEDEMLRILVKKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 80 79****************************.*********985 PP
2	Myb_DNA-binding	53	7.7e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ede + +a++++G++ W+tIar ++ gRt++ +k++w++ PKA57553.1 89 PFSPDEDETIMRAHQRFGNK-WATIARLLN-GRTDNAIKNHWNST 131 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MLRRRRRRET EGSCILSAGT MSSAAARCKE VDRIKGPWSP EEDEMLRILV KKHGARNWSL 60 ISKSIPGRSG KSCRLRWCNQ LSPSVEHRPF SPDEDETIMR AHQRFGNKWA TIARLLNGRT 120 DNAIKNHWNS TLKRKYAAGS ATSASEGFIA GDPDDGRPPI KRSNSAGRCT SPGSPSGSDV 180 SDSSHHSHRP ISPAAVAPAA HVYRPVPRTG GIVPPPVAPS QIHCTIDASA NSTGSSSRNM 240 ISDPVTSLTL SLPGSSSDLS EISDHQLHQN KLQLLSPTEA ERRRPPGVPA APFPFGSEFL 300 AVMQQMIRQE VNNYMAGMEQ RGTMCMPQPP PESVRNTVLK RIGVTKIE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MLRRRRRRET EGSCILSAGT MSSAAARCKE VDRIKGPWSP EEDEMLRILV KKHGARNWSL  60
ISKSIPGRSG KSCRLRWCNQ LSPSVEHRPF SPDEDETIMR AHQRFGNKWA TIARLLNGRT  120
DNAIKNHWNS TLKRKYAAGS ATSASEGFIA GDPDDGRPPI KRSNSAGRCT SPGSPSGSDV  180
SDSSHHSHRP ISPAAVAPAA HVYRPVPRTG GIVPPPVAPS QIHCTIDASA NSTGSSSRNM  240
ISDPVTSLTL SLPGSSSDLS EISDHQLHQN KLQLLSPTEA ERRRPPGVPA APFPFGSEFL  300
AVMQQMIRQE VNNYMAGMEQ RGTMCMPQPP PESVRNTVLK RIGVTKIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	8	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-70	MYB family protein